First thing I would do before working on an "F" series machine was to install a terminal strip where the wiring met the valve coils. This just made everything easier down the road. Hooking/unhooking was a breeze and it also provided a good test point.
Check your resistance on the coils. I don't know the value, but its not close to zero and not infinite either. The way you removed that pilot coil clump was a good one, other than the oil leak it caused. You should not have lost anything. (far as I can remember)
When I worked on the coils, I would remove the whole pilot section. I remember it being held on with 4 Allen head cap screws. When the pilot section came off, the oil streamed out of a little 1/8" hole in the face of the main valve body. The sharpened end of a pencil fit that hole perfectly and stopped the leak. Then I'd work on the coils on a bench or other semi-suitable surface.
I can imagine messing with those coils when they are 40+ years old would be something you'd like to avoid. They were bad enough when the JLG was few years old. And yes, even brand new machines messed up on a regular basis.