serial number please
I am a bit confused your saying the engines wont talk to each other.
These engines are not electronic,(unless they have had an emissions update) they are mechanically governed engines and the rear engine is throttled up and down by an air slave cylinder controlled by its own throttle pedal
if the engines are not running properly have you checked the basics, air, fuel, valves etc
You also said you replaced the electrical wire. Do you mean you changed the harness between tractor and scraper all the way to the rear engine/transmission.
Are you in fact chasing a transmission shift sync problem between tractor transmission and scraper transmission
What clock are you talking about?
Do you mean transmission syncing either the shift card or rotary switch depending on serial number